rs33424439 SNP Detail

Summary

• ID
  rs33424439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105500817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGAGATGT TTATTGGAGA TTGTGTTTAT TCGGCTGTCA
  CGGCGAGAAA ACGCGGTGAC ATAATTACCT CTGACCAGAG TCCTCGCCCT GCGCCCAGGG
  Y
  GAGCCAGGGA CTTCCTCTGC TGTGGTCTTA CTCTGCTGCC CTCCTTGATC AGAGGGCAAA
  TCGGATTGGT GTGTCTACTT TTTCCTCCCT CAGACTTCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45276865	mCV27580878	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147168837	ENSMUSSNP1423192	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33424439					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105500817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12017	CpG island 12017	1329 bp distal
Cpgi12018	CpG island 12018	151 bp distal
Cpgi12019	CpG island 12019	1922 bp proximal
Pax6	paired box 6	within coordinates
Pax6os1	paired box 6 opposite strand 1	142 bp upstream
Rr370602	regulatory region 370602	within coordinates
Rr562268	regulatory region 562268	1562 bp distal
Rr562269	regulatory region 562269	166 bp distal
Rr562270	regulatory region 562270	within coordinates
Rr562271	regulatory region 562271	898 bp proximal
Rr562272	regulatory region 562272	1399 bp proximal
Tssr19250	transcription start site region 19250	1558 bp downstream
Tssr19251	transcription start site region 19251	1522 bp downstream
Tssr25562	transcription start site region 25562	174 bp upstream
Tssr25563	transcription start site region 25563	150 bp upstream