rs33425306 SNP Detail

Summary

• ID
  rs33425306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28909901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG AGAGCCTGGG CTTTGAGGCA
  R
  GACTAATATT TGCCTAGGGG GCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39534100	mCV22893308	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss145423363	ENSMUSSNP3509762	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33425306					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28909901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8895	CpG island 8895	907 bp distal
Cpgi8896	CpG island 8896	within coordinates
Mapk14	mitogen-activated protein kinase 14	415 bp upstream
Rr370201	regulatory region 370201	199 bp upstream
Rr524631	regulatory region 524631	1143 bp distal
Rr524632	regulatory region 524632	758 bp distal
Rr524633	regulatory region 524633	within coordinates
Rr524634	regulatory region 524634	1151 bp proximal
Rr524635	regulatory region 524635	1652 bp proximal
Slc26a8	solute carrier family 26, member 8	694 bp upstream
Tssr143452	transcription start site region 143452	401 bp upstream
Tssr143453	transcription start site region 143453	461 bp upstream
Tssr143454	transcription start site region 143454	492 bp upstream
Tssr143455	transcription start site region 143455	535 bp upstream
Tssr143456	transcription start site region 143456	863 bp upstream
Tssr143457	transcription start site region 143457	1343 bp upstream
Tssr143458	transcription start site region 143458	1665 bp upstream
Tssr143459	transcription start site region 143459	1691 bp upstream
Tssr147147	transcription start site region 147147	1163 bp upstream
Tssr147148	transcription start site region 147148	1149 bp upstream
Tssr147149	transcription start site region 147149	1096 bp upstream
Tssr147150	transcription start site region 147150	218 bp downstream
Tssr147151	transcription start site region 147151	292 bp downstream