rs33425493 SNP Detail

Summary

• ID
  rs33425493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81252204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGCCTCAGCC TTTGCTCCCT GGGGCTGCTC GTCACGGCCA TCTTCACCGA
  Y
  CACTGGTACG AGACCGACCC CCGGCGCCAC AAGGAGAGCT GCGAGCGCAG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39534586	mCV27577782	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33425493					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81252204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9543	CpG island 9543	within coordinates
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	1789 bp proximal
Gm65830	predicted gene, 65830	within coordinates
Gm65833	predicted gene, 65833	447 bp downstream
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	within coordinates
Tssr145973	transcription start site region 145973	918 bp downstream
Tssr145974	transcription start site region 145974	771 bp downstream
Tssr145975	transcription start site region 145975	131 bp downstream
Tssr145976	transcription start site region 145976	104 bp downstream