rs33426123 SNP Detail

Summary

• ID
  rs33426123
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123126664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC CGCAGCCCCC CAGATCCCAG
  K
  CGAACCCCGA GCCCGCTCAG TCCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45777807	mCV24599797	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss321670130	CHEV_5_123438610	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33426123					SNP	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123126664 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	753 bp upstream
Cpgi16565	CpG island 16565	within coordinates
Cpgi16566	CpG island 16566	461 bp proximal
Gm44574	predicted gene 44574	within coordinates
Kdm2b	lysine (K)-specific demethylase 2B	within coordinates
Rr620030	regulatory region 620030	79 bp distal
Rr620031	regulatory region 620031	within coordinates
Rr620032	regulatory region 620032	488 bp proximal
Rr620033	regulatory region 620033	548 bp proximal
Rr620034	regulatory region 620034	695 bp proximal
Rr620035	regulatory region 620035	1212 bp proximal
Rr620036	regulatory region 620036	1715 bp proximal
Tssr48729	transcription start site region 48729	989 bp downstream
Tssr48730	transcription start site region 48730	641 bp upstream
Tssr48731	transcription start site region 48731	664 bp upstream
Tssr48732	transcription start site region 48732	689 bp upstream
Tssr48733	transcription start site region 48733	747 bp upstream
Tssr48734	transcription start site region 48734	974 bp upstream
Tssr48735	transcription start site region 48735	1117 bp upstream
Tssr48736	transcription start site region 48736	1143 bp upstream
Tssr48737	transcription start site region 48737	1317 bp upstream
Tssr53168	transcription start site region 53168	1154 bp upstream
Tssr53169	transcription start site region 53169	75 bp upstream
Tssr53170	transcription start site region 53170	82 bp downstream
Tssr53171	transcription start site region 53171	442 bp downstream
Tssr53172	transcription start site region 53172	485 bp downstream
Tssr53173	transcription start site region 53173	659 bp downstream
Tssr53174	transcription start site region 53174	682 bp downstream
Tssr53175	transcription start site region 53175	1684 bp downstream
Tssr53176	transcription start site region 53176	1803 bp downstream
Tssr53177	transcription start site region 53177	1859 bp downstream
Tssr53178	transcription start site region 53178	1876 bp downstream
Tssr53179	transcription start site region 53179	1917 bp downstream
Tssr53180	transcription start site region 53180	1932 bp downstream