rs33426594 SNP Detail

Summary

• ID
  rs33426594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48654385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGCCCT GCATCTTGTC
  CCTGCAGCAT CTCAGCTGGA AGTGGAAGGA GAGGTAGGGA ACGTTAGCCT GTCTCTAGGC
  AGACTGAGGT CTCTGAAAGG CAGGCCATCA GCTCCGTAAT TCCCCCTTTC ATGTTCCCAT
  CTCAGTAATA GCTGGAGACA AGGTGCAAGA GGTAGAAAGT TTGGCTGAAC CCTTGTCCCC
  Y
  TGCCCTGGCC ATAACTTGGG TGCTCCAATG CCATGTCCTC TACCCCAAAA GGATCCCCAA
  AATAGCAGTC TCATGTCTCC CCTCAAAATA GCCCTGAGAC AAGTCCTTCT TAAAAGAGGA
  ACAGAGCCAC AGAAATAGGG AAGCTGAGTT CAAACTTAGG AAAGAGGCAT CAAGTATGGA
  TGACTGAGGA GCGGACAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39534493	mCV24482055	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss325408109	CHEV_17_48486682	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33426594					SNP	C	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48654385 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1185 bp distal
Rr335234	regulatory region 335234	384 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	940 bp downstream
Tssr145094	transcription start site region 145094	912 bp downstream
Tssr145095	transcription start site region 145095	864 bp downstream
Tssr145096	transcription start site region 145096	831 bp downstream
Tssr145097	transcription start site region 145097	144 bp upstream
Tssr145098	transcription start site region 145098	471 bp upstream
Tssr145099	transcription start site region 145099	1123 bp upstream
Tssr145100	transcription start site region 145100	1152 bp upstream
Tssr145101	transcription start site region 145101	1189 bp upstream
Tssr145102	transcription start site region 145102	1288 bp upstream
Tssr148525	transcription start site region 148525	1333 bp downstream