rs33427492 SNP Detail

Summary

• ID
  rs33427492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102488606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGGGAG AGAGAGAGAG AGAAATTATG GCATCCCTCA
  CACCCTGCTC GCCCTCGGGG AACCACATTA ATATTAATCT AGACGAATGA TTGAATGTCC
  GGGATTTATT CGGGCCCGGG TAAAGAAGGA CCCGCAGCTG GGTCGCGTTT CCTTCCGGTC
  R
  CCTGAGTGTT TCTGCAGCTC AGATTCAGTG GGACTTCTAC TCTCAGAAGT GGTAGGATGT
  GGGTGGGTGT GCCGGCCTGT GTGATGTGAG CCCGAGCAGA TGTCCAGGGA GTGATGGGGA
  GTGCCAAGGC TTCTCCAAGG ATTGGGGACG GAGGGGCATC CCGGGTCTCA GCGCTTGGCC
  CAGCACAGGG TGACCCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45277243	mCV23733489	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss320439895	CHEV_2_102498418	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33427492					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102488606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	333 bp proximal
Gm57687	predicted gene, 57687	1439 bp upstream
Rr561712	regulatory region 561712	1596 bp distal
Rr561713	regulatory region 561713	within coordinates
Rr561714	regulatory region 561714	530 bp proximal
Rr561715	regulatory region 561715	530 bp proximal
Rr561716	regulatory region 561716	1031 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	398 bp upstream
Tssr19098	transcription start site region 19098	22 bp downstream
Tssr19099	transcription start site region 19099	19 bp upstream
Tssr19100	transcription start site region 19100	315 bp upstream
Tssr19101	transcription start site region 19101	379 bp upstream
Tssr19102	transcription start site region 19102	416 bp upstream
Tssr19103	transcription start site region 19103	465 bp upstream
Tssr19104	transcription start site region 19104	491 bp upstream
Tssr19105	transcription start site region 19105	557 bp upstream
Tssr19106	transcription start site region 19106	582 bp upstream
Tssr19107	transcription start site region 19107	593 bp upstream
Tssr19108	transcription start site region 19108	636 bp upstream
Tssr19109	transcription start site region 19109	672 bp upstream
Tssr19110	transcription start site region 19110	952 bp upstream