rs33428315 SNP Detail

Summary

• ID
  rs33428315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85705677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG CAAGTGGAGA TTGGATACCT
  Y
  AGGATATCCC CGGAAAAGTC TCGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46275086	mCV24067461	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss145398688	ENSMUSSNP2395651	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss322752775	CHEV_8_87502947	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33428315					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85705677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	2 bp distal
Cpgi20739	CpG island 20739	756 bp proximal
Junb	jun B proto-oncogene	300 bp upstream
Rr187033	regulatory region 187033	within coordinates
Rr382406	regulatory region 382406	826 bp downstream
Rr401033	regulatory region 401033	89 bp downstream
Rr401034	regulatory region 401034	830 bp upstream
Tssr78492	transcription start site region 78492	1250 bp downstream
Tssr78493	transcription start site region 78493	1141 bp downstream
Tssr78494	transcription start site region 78494	1022 bp downstream
Tssr78495	transcription start site region 78495	877 bp downstream
Tssr78496	transcription start site region 78496	443 bp downstream
Tssr78497	transcription start site region 78497	419 bp downstream
Tssr78498	transcription start site region 78498	61 bp downstream
Tssr78499	transcription start site region 78499	1139 bp upstream
Tssr78500	transcription start site region 78500	1155 bp upstream
Tssr78501	transcription start site region 78501	1303 bp upstream
Tssr82216	transcription start site region 82216	1498 bp upstream
Tssr82217	transcription start site region 82217	1160 bp upstream
Tssr82218	transcription start site region 82218	1048 bp upstream
Tssr82219	transcription start site region 82219	1023 bp upstream
Tssr82220	transcription start site region 82220	968 bp upstream
Tssr82221	transcription start site region 82221	932 bp upstream
Tssr82222	transcription start site region 82222	905 bp upstream
Tssr82223	transcription start site region 82223	585 bp upstream
Tssr82224	transcription start site region 82224	508 bp upstream
Tssr82225	transcription start site region 82225	324 bp upstream
Tssr82226	transcription start site region 82226	1949 bp downstream