rs33430333 SNP Detail

Summary

• ID
  rs33430333
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118406832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAGAGGTA GCATGGGGAA AGGCAGATGT ATACCTGGGG
  CAGTGCCTGT CGCCCGTCCG ACCCCCATCA GCTAGGGCCT CAGTCACATG GTGGATTTTT
  W
  AAAGTTTCGG GAACTTCTGT GTAAGGGTGT CCCTAAAAGT TCCTTAGCAG CCTCTGTTTG
  GAGCTATGCT GGCTCCTATA GGCTTATGCA GCGCCCTTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45777860	mCV23380125	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					A		T
ss60831465	NES16022138	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	A	T		A	T	A	T		A	A	A		T
ss149162396	ENSMUSSNP4251380	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss321662385	CHEV_5_118718776	CHEVERUD	SCREENING_POP	f	SNP													A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33430333					SNP	T	T	T	T	T	A	T	A	A	T	A	T	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60831465	NES16022138	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118406832 () rs orientation: forward

Symbol	Name	Function Class
Gm73266	predicted gene, 73266	476 bp upstream
Rr618848	regulatory region 618848	58 bp proximal
Rr618849	regulatory region 618849	427 bp proximal
Rr618850	regulatory region 618850	498 bp proximal