rs33432460 SNP Detail

Summary

• ID
  rs33432460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102492440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTTCTGC GTTTGATCTT
  TGCCATCTTA CAGAGCATTA CTGTCCGGTT ATTTGAAGTT TCTGATTGTG TTTCACTGGG
  AACATCAGCA TGGCTTTTGT AAAACTCAGC AGTGGCTCTC ATAGTTTTCA GGTTCTGAGA
  AGTGTTTTCC TATAGAAGCA AGGTTCAATT TGACAGCTGA ATGTCTTTTG TTTGTTGTTG
  Y
  TGCTGCTGCT GTTGCTGCTG AGTCCTGGGT GTGACTGGAA TCACTGAGAT GGTGGCTTTT
  AGGTTCCTGA CCCAAATTGG AAAGAGATTA CAAGTCGCTG GTGACAGGCA GGGTTTTGTC
  TGTTATTGAC TGGGTCACAG TAGAGTGACC AGATGCTGAA GAGACAACCA TTTTAGAAAT
  ATGTTTTTAA GGGATAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45278396	mCV23733854	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147119868	ENSMUSSNP530040	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320439922	CHEV_2_102502252	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33432460					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102492440 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57687	predicted gene, 57687			within coordinates
Rr561717	regulatory region 561717			202 bp proximal
Rr561718	regulatory region 561718			777 bp proximal
Rr561719	regulatory region 561719			1801 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2			Intron
				Noncoding-Transcript-Variant