rs33433485 SNP Detail

Summary

• ID
  rs33433485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:119802312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGGACTC CAGGTCCCCC
  AAGCTCTCGG CACCCTGCTC CATCTGCAGG CGGGTGAGGG TGTGAATGAA GTGCGTCTGA
  ACTCTTGTCT GATTGAATTC CACTCGACCA TTGGGGTTCT CGCAGCCCTC CCTGCAGCAG
  CCACAGGGGA AGGACGTGTG ATCCATCTGC AGAGAAAGAC AAAGCCAAAG TGAGAACTTC
  R
  GAGATGCAAG AAGCCAGCAG GCCCGGCTCC CCACAGACAG GGCTTCCCTG TGTAGCCCTG
  CCCGAGTACT GGGATTATAG GCACACCCCC CTTATCTTAC CCAGTCCGAC CACGCACCTG
  GCACTTAATG CCGGCCAAGC TGCAACTGCA GGTCTCAGGG TCACAGACGC CATCACAGTG
  ACAACCACAA TCCTCCCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47797867	NES11984942	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G		A	G	G	A		G
ss323223776	CHEV_9_119882364	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33433485					SNP	G	G	G	G	A	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47797867	NES11984942	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119802312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22487	CpG island 22487	873 bp proximal
Csrnp1	cysteine-serine-rich nuclear protein 1	Intron
Rr688588	regulatory region 688588	1716 bp distal
Rr688590	regulatory region 688590	812 bp proximal
Rr688591	regulatory region 688591	1511 bp proximal
Rr688592	regulatory region 688592	1555 bp proximal