rs33433487 SNP Detail

Summary

• ID
  rs33433487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:119802514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGCAAGA AGCCAGCAGG
  CCCGGCTCCC CACAGACAGG GCTTCCCTGT GTAGCCCTGC CCGAGTACTG GGATTATAGG
  CACACCCCCC TTATCTTACC CAGTCCGACC ACGCACCTGG CACTTAATGC CGGCCAAGCT
  GCAACTGCAG GTCTCAGGGT CACAGACGCC ATCACAGTGA CAACCACAAT CCTCCCGGGA
  Y
  TGGCGCAGCA CCTGCAGCTC CCGCTTCTCC TCTCGGTCAA TCCTTCGAAC GCCGGAAGCC
  CGAAGGAGAG CCCGTCGCTG CCGAGGTGGA TGGGGCTGGA GGAAATTGGC TTCCTCCAGG
  CGGCCATTTG CCACGGCCAC TGCCAAGTCC TCCTCTACAG AGGCGTCATC GATGGCATCC
  GCTGTGAGAG GCACGCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47797869	NES11984945	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C		T	C	C	T		C
ss323223778	CHEV_9_119882566	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33433487					SNP	C	C	C	C	T	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47797869	NES11984945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119802514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22487	CpG island 22487	671 bp proximal
Csrnp1	cysteine-serine-rich nuclear protein 1	Coding-Synonymous
Rr688588	regulatory region 688588	1918 bp distal
Rr688590	regulatory region 688590	610 bp proximal
Rr688591	regulatory region 688591	1309 bp proximal
Rr688592	regulatory region 688592	1353 bp proximal