rs33433491 SNP Detail

Summary

• ID
  rs33433491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:119802667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGTCAC AGACGCCATC
  ACAGTGACAA CCACAATCCT CCCGGGACTG GCGCAGCACC TGCAGCTCCC GCTTCTCCTC
  TCGGTCAATC CTTCGAACGC CGGAAGCCCG AAGGAGAGCC CGTCGCTGCC GAGGTGGATG
  GGGCTGGAGG AAATTGGCTT CCTCCAGGCG GCCATTTGCC ACGGCCACTG CCAAGTCCTC
  Y
  TCTACAGAGG CGTCATCGAT GGCATCCGCT GTGAGAGGCA CGCCTGCCCC TGACTCCGGA
  ACTCCAGCCA CTGAAAACTA TAAGTACAGA AAGACGGTGT GAGAGAGAGA GAGATTTAGC
  TCTCCCAGAG AGTGGGGTGC TGTCTGTGGG GGAGGGGTAC ACACTGTGCT CCACAGCTAC
  AAGGATCTCT TACTCAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47797873	NES11984950	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C		C	C
ss323223780	CHEV_9_119882719	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs33433491					SNP	C	C	C	C	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47797873	NES11984950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119802667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22487	CpG island 22487	518 bp proximal
Csrnp1	cysteine-serine-rich nuclear protein 1	Coding-Synonymous
Rr688590	regulatory region 688590	457 bp proximal
Rr688591	regulatory region 688591	1156 bp proximal
Rr688592	regulatory region 688592	1200 bp proximal