rs33433766 SNP Detail

Summary

• ID
  rs33433766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102491288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGTTGG AAAACATCTT
  TGAAAAATAT TGTCTTCCAA ATGCTGCAAC CAACTTATTG TCGATTCTGG TGGCCAGAGG
  GGAAAAGAGA GGACAACAAA CACCCCCAAA CTCCATCCAT GGCTGCCAAA TGGTTTGACA
  TTCAGAGTAA AGCAGGTGCG ATTTTCAGGA CTGAAACCAT TACTAGTCCA GCTAGTGCCA
  Y
  CTTTGTGCAT TGTGCAAGGT TAGGAAATGA TTGTCAAAGG AACTTGTATT TAAGAGATGA
  AAGAATTGGA AAAAAAAATC TAAAAACCGG AAACAAATGT AGAAAAATAT ATTATTTAGG
  GGCAGTCATC AGTCAGCTGG AAACATTCTG GAAACCCTTC TTTTCTCCCA GAAGCCTTTG
  CAGAGTCTCT GTTCAGTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45277929	mCV23733806	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss147119817	ENSMUSSNP2878663	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320439915	CHEV_2_102501100	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33433766					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102491288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	1188 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561715	regulatory region 561715	1652 bp distal
Rr561716	regulatory region 561716	867 bp distal
Rr561717	regulatory region 561717	1354 bp proximal
Rr561718	regulatory region 561718	1929 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19109	transcription start site region 19109	1993 bp downstream
Tssr19110	transcription start site region 19110	1711 bp downstream