rs33434062 SNP Detail

Summary

• ID
  rs33434062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119898776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTTGAGC CTTTCATCCT
  CCTGCCTCCA CTGCCCAAGT CTGGGATGCT CCACCGTTTA TGAGGGGCTG GGGATGGAAC
  TCAGGCTAGT CTAACATTTT GCCATCTGAG CTGTATCCCC AGGGCATTCA AGCTCTTCCT
  CGTGTTCCTG TCTGGAATCT GGCTGAGAAT CTCCTACTGT TGCTGTCAAC CAATCTCATC
  Y
  GTGTCTGTTT CCCACACAAC TCCACCTTCA GCTGGGGCCT GAGGGTACCC TGTGCCCACC
  ACTCCCTTCC CATCCATCTT ATTCATCTCA CCATCCGGCC ATCTACCCAT GTGCCAGAGA
  GGACCCCGAG TCGTAGCATC ACAGACTTAG CACTCTCGGA GGCTCCTCTC TTCTGTCTGG
  TGAGCATGTT CTCAGCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47798435	NES11981431	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C		T	C	C	T		C
ss323224498	CHEV_9_119978828	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33434062					SNP	C	C	C	C	T	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798435	NES11981431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119898776 () rs orientation: forward

Symbol	Name	Function Class
Cx3cr1	C-X3-C motif chemokine receptor 1	1414 bp upstream
Gm33858	predicted gene, 33858	within coordinates
Tssr92011	transcription start site region 92011	1419 bp upstream
Tssr92012	transcription start site region 92012	1409 bp upstream