rs33435166 SNP Detail

Summary

• ID
  rs33435166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119898798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCCACT GCCCAAGTCT
  GGGATGCTCC ACCGTTTATG AGGGGCTGGG GATGGAACTC AGGCTAGTCT AACATTTTGC
  CATCTGAGCT GTATCCCCAG GGCATTCAAG CTCTTCCTCG TGTTCCTGTC TGGAATCTGG
  CTGAGAATCT CCTACTGTTG CTGTCAACCA ATCTCATCCG TGTCTGTTTC CCACACAACT
  Y
  CACCTTCAGC TGGGGCCTGA GGGTACCCTG TGCCCACCAC TCCCTTCCCA TCCATCTTAT
  TCATCTCACC ATCCGGCCAT CTACCCATGT GCCAGAGAGG ACCCCGAGTC GTAGCATCAC
  AGACTTAGCA CTCTCGGAGG CTCCTCTCTT CTGTCTGGTG AGCATGTTCT CAGCACCATG
  GCTTCTTTTT ACTTCCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47798439	NES11981433	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	C	C	C			C	C	T		C
ss137051614	ENSMUSSNP1425525	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C									T
ss323224499	CHEV_9_119978850	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33435166					SNP	C	C	C	C	C	T	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798439	NES11981433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119898798 () rs orientation: forward

Symbol	Name	Function Class
Cx3cr1	C-X3-C motif chemokine receptor 1	1436 bp upstream
Gm33858	predicted gene, 33858	within coordinates
Rr688628	regulatory region 688628	929 bp proximal
Tssr92011	transcription start site region 92011	1441 bp upstream
Tssr92012	transcription start site region 92012	1431 bp upstream