rs33435171 SNP Detail

Summary

• ID
  rs33435171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119899009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCCTGA GGGTACCCTG
  TGCCCACCAC TCCCTTCCCA TCCATCTTAT TCATCTCACC ATCCGGCCAT CTACCCATGT
  GCCAGAGAGG ACCCCGAGTC GTAGCATCAC AGACTTAGCA CTCTCGGAGG CTCCTCTCTT
  CTGTCTGGTG AGCATGTTCT CAGCACCATG GCTTCTTTTT ACTTCCCACT GCATTCTATC
  Y
  GCTTCCTCTT CTCCAGCACA CACATCCCCT GGCCTGTGCA TGCCTTTCCT CCCTGCCTCA
  CCTGCTGTGG GCTGACAAGC CAGCCTGTCC TGCTCATGGA TGCCGCAGCA GGTGAGCTCT
  GTGACGAGTG TCAGTAACTC ACGCTGGTAT CCTTGTTCCC AGATGGACGG CTGCACACAC
  CGAGGGCACT GAGCTCGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47798445	NES11981436	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C		T	C	C	T		C
ss323224501	CHEV_9_119979061	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33435171					SNP	C	C	C	C	T	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798445	NES11981436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119899009 () rs orientation: forward

Symbol	Name	Function Class
Cx3cr1	C-X3-C motif chemokine receptor 1	1647 bp upstream
Gm33858	predicted gene, 33858	within coordinates
Rr688628	regulatory region 688628	718 bp proximal
Tssr92011	transcription start site region 92011	1652 bp upstream
Tssr92012	transcription start site region 92012	1642 bp upstream