rs33435332 SNP Detail

Summary

• ID
  rs33435332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101250806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAAAGTT ATCGGGTACA
  AAATCTGCTA GTTGTTGGCA GTTTTCTTAG AAACCTGCAC CAAGAACAAT TAAAGACAGG
  TGATGCAAGA GAGCCCTGGC TGAAGTCCCG TCCTCACCCA GCTATTCCTG AGCCCTGCTA
  CATCCCTTCC CTCCCCATGA ATTGGTTATT CAACAGTCCC TTCCATGACC CAGAGATTTC
  Y
  CATTATTGCC TAGATGATCT TGAGTCACTT ACACAGAATC CTGAGTAAGG CCTGCCAACC
  CTTTCCGTGC ATGGCCCCAG CCCCATGCCA CCTACCCTCC GGCCTCCACC CTTTGTACCG
  CAGCCTTCTC CAGGTATGCC CACAGGACAC CACCAGGCCC AGACCAGCTG GTGGCAAGGA
  CCATCAACTC TAGTGTTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813730	NES10712486	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33435332					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813730	NES10712486	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101250806 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582012	regulatory region 582012	795 bp distal
Rr582013	regulatory region 582013	within coordinates
Rr582014	regulatory region 582014	714 bp proximal
Rr582015	regulatory region 582015	1676 bp proximal