rs33435860 SNP Detail

Summary

• ID
  rs33435860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27748936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCACTGGGC TTGGCTTGGC CAATTTTTTT TTGTTTTTTT
  TTTGTTTTTG TTTTTGTTTT TTTGTTTTTG TTTTTTTGAG ACAGGGTTTC TCTGTGTAGC
  Y
  CTGGCAGTCC TGGAACTCAC TTTGTAGACC AGGCTGGCCT CGAACTCAGA AATCTGCCTG
  CCTCTGCCTC CCGAGTGCTG ATCCCCCAAC CTTCCCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46275906	mCV24519083	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss148886536	ENSMUSSNP2125992	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33435860					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27748936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	1030 bp proximal
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	1419 bp upstream
Rr176179	regulatory region 176179	1936 bp distal
Rr186444	regulatory region 186444	464 bp proximal
Tssr76776	transcription start site region 76776	1413 bp upstream
Tssr76777	transcription start site region 76777	1424 bp upstream
Tssr76778	transcription start site region 76778	1487 bp upstream
Tssr76779	transcription start site region 76779	1521 bp upstream
Tssr76780	transcription start site region 76780	1589 bp upstream