rs33436000 SNP Detail

Summary

• ID
  rs33436000
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133981299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACACAA ATACATACAT
  GAACACACAT GCATACACAC ATATCCACAC AAAGAGCAAG AACCTTCTTC AAACGTAAAG
  CATAGTATAT TATACATATA TAAAAAAGGA ATATCTGAAA ATTTTGATTA AAATATGGAG
  ATAAAATACT TACAAATATT ATTGCAAGCT ACTAATTTTT CTAAGGAAAA ATGTCTTTCT
  K
  ACATAAGTTT TAAGATTTAA GTGGTATCAA CATAATTCAG TAAAATGTGT ATTTTCCAAA
  CTATTAGCCT GAGCCTGACC CGGACAGACA CACCTCTCAT GGACACACCT ATTTTTGTCC
  CACCTATGTG AGGCAGGAAG GTTACTTGAT ACTCAACTAA TTGTGCTGGG AAATATGGAG
  TTCTTGGAAT AAAAAAAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45278506	mCV22314615	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss147630484	ENSMUSSNP6912328	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
ss320512726	CHEV_2_133965115	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33436000					SNP	G	T	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133981299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12318	CpG island 12318	1556 bp distal