rs33436154 SNP Detail

Summary

• ID
  rs33436154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119899151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGGTGAG CATGTTCTCA
  GCACCATGGC TTCTTTTTAC TTCCCACTGC ATTCTATCCG CTTCCTCTTC TCCAGCACAC
  ACATCCCCTG GCCTGTGCAT GCCTTTCCTC CCTGCCTCAC CTGCTGTGGG CTGACAAGCC
  AGCCTGTCCT GCTCATGGAT GCCGCAGCAG GTGAGCTCTG TGACGAGTGT CAGTAACTCA
  Y
  GCTGGTATCC TTGTTCCCAG ATGGACGGCT GCACACACCG AGGGCACTGA GCTCGCCTGA
  GCTTGCAGGA CATCCCATTT CAGGGTGAGG AGGCAGCAAG CCTGCTCTAT GGACCTGAAG
  GCCACAGACT GTACCTCATC CATCTGTGCA TGTGTGTGCA AGTGTGTGTG GGTATGTATG
  TGTGGGTATG TATGTGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47798449	NES11981438	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33436154					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798449	NES11981438	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119899151 () rs orientation: forward

Symbol	Name	Function Class
Cx3cr1	C-X3-C motif chemokine receptor 1	1789 bp upstream
Gm33858	predicted gene, 33858	within coordinates
Rr688628	regulatory region 688628	576 bp proximal
Tssr92011	transcription start site region 92011	1794 bp upstream
Tssr92012	transcription start site region 92012	1784 bp upstream