rs33436415 SNP Detail

Summary

• ID
  rs33436415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101197542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAGGTGAA GTGGATGGTG AAAGGTAGTC ACCAATAAGG
  AGACACTGTC TTGACAGAGA GACAGTATTC ATTTAGAAAG TGAGAGTGGA GCTACGGTTA
  Y
  AGTTCAGAGG AGAGAGCGAT GGCCCGGTGA CTTGGAGGAA TGGCTCGACA GTTAAGAGCT
  CTGGCTGCTC TCCCAGAGGT CCTGGGTTCG ATTCCCAGCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46813214	NES10715579	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33436415					SNP	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813214	NES10715579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101197542 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	312 bp downstream
Rr581992	regulatory region 581992	1797 bp distal
Rr581993	regulatory region 581993	429 bp distal
Rr581994	regulatory region 581994	within coordinates
Rr581995	regulatory region 581995	576 bp proximal
Rr581996	regulatory region 581996	882 bp proximal
Tssr34785	transcription start site region 34785	513 bp downstream