rs33438015 SNP Detail

Summary

• ID
  rs33438015
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24032532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTACATCGA ATTATGACCA AGGATGATGT TTTCTTTTGT
  CATCTTGCTT CTGCCCAACA AAAAGTTTTC TTTTTTTTTT TTTTTGATTT CTTTTTTTTT
  W
  AATTAGGTAT TTTCCTCGTT TACATTTTCA GTGCTATCCC AAAGGTCCCC CATACCCACC
  CCCCAACAAA AAGTTTTCTA AAAATTACCT TTAACTTTA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss39536442	mCV22837676	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs33438015					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24032532 () rs orientation: forward

Symbol	Name	Function Class
Gm49911	predicted gene, 49911	58 bp upstream
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142962	transcription start site region 142962	1180 bp downstream
Tssr142963	transcription start site region 142963	1036 bp downstream
Tssr142964	transcription start site region 142964	92 bp downstream
Tssr142965	transcription start site region 142965	1558 bp upstream
Tssr142966	transcription start site region 142966	1638 bp upstream
Tssr142967	transcription start site region 142967	1714 bp upstream
Tssr142968	transcription start site region 142968	1729 bp upstream
Tssr146670	transcription start site region 146670	1683 bp downstream