rs33438052 SNP Detail

Summary

• ID
  rs33438052
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25350721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGGCAAGC TACCAGCTGT CTCCTATCCC CAGCACTGTT
  ACTCACGAGC CTCGCCAGGC TGTCAGGCGA GAAGCAGGTG CTCCAGAGCT CGGCGGCGTC
  M
  GTCACACTGG GTGGGAGGGG CTGTCAGGCA CCGTGCCCGC TATGCTCCCG CACCCCACAT
  CCCTAGACTC CACTCACTAG AGGTTGAAGT CGTCGCGGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45278538	mCV25439763	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C	A
ss146378517	ENSMUSSNP347655	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33438052					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25350721 () rs orientation: forward

Symbol	Name	Function Class
Clic3	chloride intracellular channel 3	1932 bp downstream
Cpgi11321	CpG island 11321	within coordinates
Gm74786	predicted gene, 74786	344 bp upstream
Paxx	non-homologous end joining factor	within coordinates
Rr42075	regulatory region 42075	1321 bp distal
Rr56431	regulatory region 56431	within coordinates
Rr396822	regulatory region 396822	184 bp upstream
Tssr16724	transcription start site region 16724	492 bp upstream
Tssr22977	transcription start site region 22977	197 bp downstream
Tssr22978	transcription start site region 22978	224 bp downstream
Tssr22979	transcription start site region 22979	261 bp downstream
Tssr22980	transcription start site region 22980	284 bp downstream
Tssr22981	transcription start site region 22981	312 bp downstream
Tssr22982	transcription start site region 22982	360 bp downstream
Tssr22983	transcription start site region 22983	398 bp downstream
Tssr22984	transcription start site region 22984	409 bp downstream