rs33438854 SNP Detail

Summary

• ID
  rs33438854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43879737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT CAGTGGGCTA CTGCGGGGAC
  R
  TGGGAGCGTG GTCCTCAAGG TGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39535884	mCV23351274	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss62747663	NES17340462	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	G		A	A	A	A		A	A	G	A		A
ss145670522	ENSMUSSNP3252430	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss325395755	CHEV_17_43705795	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33438854					SNP	A	A	A	G	A	A	G	G	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747663	NES17340462	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43879737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	355 bp distal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527121	regulatory region 527121	567 bp distal
Rr527122	regulatory region 527122	within coordinates
Tssr144685	transcription start site region 144685	841 bp downstream
Tssr144686	transcription start site region 144686	709 bp downstream
Tssr144687	transcription start site region 144687	689 bp downstream
Tssr144688	transcription start site region 144688	543 bp downstream
Tssr144689	transcription start site region 144689	388 bp downstream
Tssr144690	transcription start site region 144690	353 bp downstream
Tssr144691	transcription start site region 144691	305 bp downstream
Tssr144692	transcription start site region 144692	254 bp downstream
Tssr144693	transcription start site region 144693	207 bp downstream
Tssr144694	transcription start site region 144694	170 bp downstream
Tssr144695	transcription start site region 144695	142 bp downstream
Tssr144696	transcription start site region 144696	103 bp downstream
Tssr144697	transcription start site region 144697	550 bp upstream
Tssr148130	transcription start site region 148130	317 bp upstream
Tssr148131	transcription start site region 148131	1102 bp downstream
Tssr148132	transcription start site region 148132	1125 bp downstream