rs33439433 SNP Detail

Summary

• ID
  rs33439433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13869694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTCTAAT TTAAATTCTA
  GCCAGAATAT TTGTCCTGGG CCCAAAAATG TGAATTAAAA ATCTCTGTAA TCTATTGGTT
  TGGGGACTCT TGGAATTACT AGGGCAAAGA GGGTACACCT TTTTAGCTGG TGTACAAATC
  AAAACACTTC CTTTCCTATT TGTGGATTTT CTATCAGAAT CCTCGTCTAT CTCAAAGATG
  Y
  CCATTTCTTG CCCATGGTGA TCCTTTAAGG TAACATAACC AGTCCCTTTT CACTCAGATT
  ATAAATAATT AGCTCATAGA TACAAGCAGA CCAAAACAAT AGGTGAACTG ATGGCATAAT
  GGCTATGTAT TTGATACAAT ACATCTCACA AGGAGAAGAT ACTCAATGTA AAGTTATCTT
  TTAACAAATA TTTTCTCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47798564	NES11715306	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33439433					SNP	C	C	C	C	C	C	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798564	NES11715306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13869694 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	1874 bp upstream
Rr378964	regulatory region 378964	601 bp upstream
Rr626597	regulatory region 626597	1760 bp proximal
Rr626598	regulatory region 626598	1883 bp proximal
Smim30	small integral membrane protein 30	within coordinates
Tssr54958	transcription start site region 54958	1822 bp upstream
Tssr59853	transcription start site region 59853	1378 bp downstream
Tssr59854	transcription start site region 59854	1472 bp downstream
Tssr59855	transcription start site region 59855	1764 bp downstream
Tssr59856	transcription start site region 59856	1782 bp downstream
Tssr59857	transcription start site region 59857	1992 bp downstream