rs33439668 SNP Detail

Summary

• ID
  rs33439668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72027905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTTAGT CCCCAGCAAT
  GAAACAAACT TCCAGGAGAC CTGTTTTGGA AACTTTTGCT CTTTGTTAGA TACATTGTGG
  TAGTTAAAAA TAAACAAGAG ATATGAGTTA GAGATGGAAA CTGAGCTTTA AACATTGTAT
  CTCAAAATGT CTCCCCCCCC ACACACACAC TCATTAGGAA CACTATTGCT AATACCGATA
  Y
  CTCTGTCAGC AAGAAACCCA ATTTTTTTTT TGCCTTTTCA GGATCATTTT TGTATAATTT
  TTATTTTTTG TTTCTTTAGT TCTCCTTTAT TTAATTCGTT TTCATTATTC TGTTAATTCT
  TTTTATTCGA ATCACTAGTT GTTTTCACTG AACTATGAAA TATTTAAATG GATGAAAACA
  GAGATTATTA AAATAGCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45279106	mCV23794494	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33439668					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72027905 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75163	predicted gene, 75163			within coordinates
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4			Intron
				Noncoding-Transcript-Variant
Rr558927	regulatory region 558927			704 bp distal
Rr558928	regulatory region 558928			181 bp distal
Rr558929	regulatory region 558929			329 bp distal