rs33440172 SNP Detail

Summary

• ID
  rs33440172
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9166322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCTGCA TTATTTTGCT
  TACCATAATG ATGACTAGTC CCATCCCCTT TTCTGCAAAT GTTATGATTT TATTCTTTTT
  GTATAATTTA GTGGTTGTGT AGTAATCTGA GAGTTTTAAT CTTCATTTCC TGATGACTAA
  CCAATTCGAT TTTATTTTCA CATTTTTAGT TGCCAGTGGG TTGGCGCCCT CTCTCTCTCT
  S
  TGTGTACCTT TAGTCTTTTT TGCGTTTTTA AATTTGGATT ATATAGCCTG AGAATTATTA
  TAATGATTTG ATGCTTTTAG AGAAGGCCCA AATTTGGGTT CCAGCACCCA TATAGCAATT
  CTCAACCACT TGTAATTCCA GGTTAAGGGG ATTAAGTGCC CTCTTCTGAA CTCTGCAGGC
  ACCAGGCCTT TACACATACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814164	NES10971729	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	C	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33440172					SNP	G	G	G	C	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814164	NES10971729	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9166322 () rs orientation: forward

Symbol	Name	Function Class
DXMit136	DNA segment, Chr X, Massachusetts Institute of Technology 136	337 bp proximal
Rr689856	regulatory region 689856	1108 bp distal
Xk	X-linked Kx blood group	within coordinates