rs33440215 SNP Detail

Summary

• ID
  rs33440215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13869717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATATTTG TCCTGGGCCC
  AAAAATGTGA ATTAAAAATC TCTGTAATCT ATTGGTTTGG GGACTCTTGG AATTACTAGG
  GCAAAGAGGG TACACCTTTT TAGCTGGTGT ACAAATCAAA ACACTTCCTT TCCTATTTGT
  GGATTTTCTA TCAGAATCCT CGTCTATCTC AAAGATGCCC ATTTCTTGCC CATGGTGATC
  Y
  TTTAAGGTAA CATAACCAGT CCCTTTTCAC TCAGATTATA AATAATTAGC TCATAGATAC
  AAGCAGACCA AAACAATAGG TGAACTGATG GCATAATGGC TATGTATTTG ATACAATACA
  TCTCACAAGG AGAAGATACT CAATGTAAAG TTATCTTTTA ACAAATATTT TCTCTATTTT
  AGTATTAGAT ATGTTTAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss47798566	NES11715307	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs33440215					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798566	NES11715307	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13869717 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	1851 bp upstream
Rr378964	regulatory region 378964	578 bp upstream
Rr626597	regulatory region 626597	1737 bp proximal
Rr626598	regulatory region 626598	1860 bp proximal
Smim30	small integral membrane protein 30	within coordinates
Tssr54958	transcription start site region 54958	1799 bp upstream
Tssr59853	transcription start site region 59853	1355 bp downstream
Tssr59854	transcription start site region 59854	1449 bp downstream
Tssr59855	transcription start site region 59855	1741 bp downstream
Tssr59856	transcription start site region 59856	1759 bp downstream
Tssr59857	transcription start site region 59857	1969 bp downstream