rs33440217 SNP Detail

Summary

• ID
  rs33440217
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13869772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGGACT CTTGGAATTA
  CTAGGGCAAA GAGGGTACAC CTTTTTAGCT GGTGTACAAA TCAAAACACT TCCTTTCCTA
  TTTGTGGATT TTCTATCAGA ATCCTCGTCT ATCTCAAAGA TGCCCATTTC TTGCCCATGG
  TGATCCTTTA AGGTAACATA ACCAGTCCCT TTTCACTCAG ATTATAAATA ATTAGCTCAT
  M
  GATACAAGCA GACCAAAACA ATAGGTGAAC TGATGGCATA ATGGCTATGT ATTTGATACA
  ATACATCTCA CAAGGAGAAG ATACTCAATG TAAAGTTATC TTTTAACAAA TATTTTCTCT
  ATTTTAGTAT TAGATATGTT TAGTACATTT TTATTAAACT TTTTCTCAGA GATAAAAGTT
  TTTGGCTAAG ATCTAAGTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47798568	NES11715308	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33440217					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798568	NES11715308	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13869772 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	1796 bp upstream
Rr378964	regulatory region 378964	523 bp upstream
Smim30	small integral membrane protein 30	within coordinates
Tssr54958	transcription start site region 54958	1744 bp upstream
Tssr59853	transcription start site region 59853	1300 bp downstream
Tssr59854	transcription start site region 59854	1394 bp downstream
Tssr59855	transcription start site region 59855	1686 bp downstream
Tssr59856	transcription start site region 59856	1704 bp downstream
Tssr59857	transcription start site region 59857	1914 bp downstream