rs33440221 SNP Detail

Summary

• ID
  rs33440221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13870461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACAAGTT ATGGGCCACA
  TTATTAGTGC ACTCTTTGTT GTTAAGAGCC GCCCTCCACT CCCATCTGCC CTCCACTCCC
  ATCTGCCCCC ATTGTAGAAG AAACAAGTAT GAACGTGAAA GCATCTCTTA ACTGAGAGTG
  TTAACTCTCA GCTAACTGTA ACCCTCTTGC TGAGAACGGG AGAGATCAAA TCTTGGGGTC
  R
  GCCTCAACAG AACAATGGTT TTCAGCACAC TGGTCAGGGT GCAGTCTAAT TCAGAAGAGT
  CCTTCAGAGT CACATCTGTC CATTTCGCTT TCTTGCGTAT ATCCCCAAGC AAGCACAGAT
  GCCGGTAATG CTGAGAACCA CACCTAATAA GAGTGCAATC GCGTCTCCAG CTTCCACTGC
  TTCAACAACA GGCAGGATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47798572	NES11715310	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33440221					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798572	NES11715310	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13870461 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	1107 bp upstream
Rr378964	regulatory region 378964	within coordinates
Smim30	small integral membrane protein 30	within coordinates
Tssr54958	transcription start site region 54958	1055 bp upstream
Tssr59853	transcription start site region 59853	611 bp downstream
Tssr59854	transcription start site region 59854	705 bp downstream
Tssr59855	transcription start site region 59855	997 bp downstream
Tssr59856	transcription start site region 59856	1015 bp downstream
Tssr59857	transcription start site region 59857	1225 bp downstream
Tssr59858	transcription start site region 59858	1822 bp downstream
Tssr59859	transcription start site region 59859	1843 bp downstream
Tssr59860	transcription start site region 59860	1857 bp downstream