rs33440458 SNP Detail

Summary

• ID
  rs33440458
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101248089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATCCCT TTTAGAGGCA
  CTGACTGCCT CCTTGGTTTG CCCCACCCCC TCAACAGCAT TGCACTAAAC ATAAGCTTCT
  GCAACTGAAC CTTTGAGAGC CTTCCAAATC CTAGCTCTGA TGTCACACAC TTTTGGTGGT
  GAGCCTAGCA CCTAAGACTG AGCCATCTCT CCAGCCTATA GCCCTGGTGT CTTCTCAGAA
  S
  GAAGGTTCTC AGTCAGCGAT GTGAGAGTAG AGGAACAACA ACCTACATTT CTTCTTTTCT
  TCTCTGCTTG TGTGTGTATG TGTTTGTGTG GTGAATGTGT GTCAGTGCTT GTGTGCATGT
  GTGTGTGCAT GTGTATGTGT GGTGTGCATG TGTGTGCTTG CTTGAATGTT TACATGTATG
  TATGTGAACA CAAGAGGTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46813706	NES10712585	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33440458					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813706	NES10712585	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101248089 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582012	regulatory region 582012	1901 bp proximal