rs33440694 SNP Detail

Summary

• ID
  rs33440694
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68944142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT TTTTTGTTTT TTGTTTTTTG
  K
  TTTTTTTTAG TGTTAGCTGC AAAGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45278642	mCV23780223	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T
ss146727002	ENSMUSSNP7011813	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33440694					SNP	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68944142 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	within coordinates
Rr44228	regulatory region 44228	742 bp distal
Rr44229	regulatory region 44229	59 bp proximal
Rr50098	regulatory region 50098	59 bp proximal
Tssr18100	transcription start site region 18100	1215 bp downstream
Tssr18101	transcription start site region 18101	227 bp downstream
Tssr18102	transcription start site region 18102	195 bp downstream
Tssr18103	transcription start site region 18103	6 bp upstream
Tssr18104	transcription start site region 18104	923 bp upstream