rs33440965 SNP Detail

Summary

• ID
  rs33440965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13870693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGGGTG CAGTCTAATT
  CAGAAGAGTC CTTCAGAGTC ACATCTGTCC ATTTCGCTTT CTTGCGTATA TCCCCAAGCA
  AGCACAGATG CCGGTAATGC TGAGAACCAC ACCTAATAAG AGTGCAATCG CGTCTCCAGC
  TTCCACTGCT TCAACAACAG GCAGGATCAA AAGCAGCGAA GCGAGGACTA AGATCAATTG
  Y
  GTTGAAACTG AATTCATGAT GCTAGGATCT GGAGGGCTGA ACTTGCCTAG AAGTTAAACA
  CCGAACAAAA GAAACTGTTA AAAAAAAAAG CCTTATTTTT TTTTTTTTGA ATGACAATAT
  TAATATAAAA CAATCTTTTA GACTGGAATT TGTGAATCAT TTCAGATGTC AGTTTAAGAT
  GACAAAACTA AAGACAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47798578	NES11715313	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33440965					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798578	NES11715313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13870693 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	875 bp upstream
Rr378964	regulatory region 378964	within coordinates
Smim30	small integral membrane protein 30	within coordinates
Tssr54958	transcription start site region 54958	823 bp upstream
Tssr59853	transcription start site region 59853	379 bp downstream
Tssr59854	transcription start site region 59854	473 bp downstream
Tssr59855	transcription start site region 59855	765 bp downstream
Tssr59856	transcription start site region 59856	783 bp downstream
Tssr59857	transcription start site region 59857	993 bp downstream
Tssr59858	transcription start site region 59858	1590 bp downstream
Tssr59859	transcription start site region 59859	1611 bp downstream
Tssr59860	transcription start site region 59860	1625 bp downstream