rs33440969 SNP Detail

Summary

• ID
  rs33440969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13870870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCGAGGA CTAAGATCAA
  TTGCGTTGAA ACTGAATTCA TGATGCTAGG ATCTGGAGGG CTGAACTTGC CTAGAAGTTA
  AACACCGAAC AAAAGAAACT GTTAAAAAAA AAAGCCTTAT TTTTTTTTTT TTGAATGACA
  ATATTAATAT AAAACAATCT TTTAGACTGG AATTTGTGAA TCATTTCAGA TGTCAGTTTA
  R
  GATGACAAAA CTAAAGACAG TCATTTTAGG TTATCATTAG AAAAGAGAGG GAAAAATGCA
  TAAGATACTT GCCAAATAAA ATACCCTAAC AGGTAAAAGT CACATTTTAT TAGCATGTCT
  CTTATCTAGA AAATTCAACA CAACACGTGA CTCTGTGAAG TTGTAAGGAA TTAATAAGAC
  TTACCGAAAC AAGGGTATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss47798582	NES11715315	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs33440969					SNP	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798582	NES11715315	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13870870 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	698 bp upstream
Rr378964	regulatory region 378964	within coordinates
Rr626597	regulatory region 626597	584 bp proximal
Rr626598	regulatory region 626598	707 bp proximal
Smim30	small integral membrane protein 30	within coordinates
Tssr54958	transcription start site region 54958	646 bp upstream
Tssr59853	transcription start site region 59853	202 bp downstream
Tssr59854	transcription start site region 59854	296 bp downstream
Tssr59855	transcription start site region 59855	588 bp downstream
Tssr59856	transcription start site region 59856	606 bp downstream
Tssr59857	transcription start site region 59857	816 bp downstream
Tssr59858	transcription start site region 59858	1413 bp downstream
Tssr59859	transcription start site region 59859	1434 bp downstream
Tssr59860	transcription start site region 59860	1448 bp downstream