rs33441340 SNP Detail

Summary

• ID
  rs33441340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:4331728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGAAGC ACTAGAGATA
  TAGTGATAAG ACAAACATGA ATATATCCCA TTGGGACGAC ACACACACAC ACACACACAC
  ACACACACAC ACACACAAAC AAAGTAAAAT GAAAACAAAA ACAAAATATT TGGCAGATGC
  AGGGGTTTCA AAAAAAAAAG TCTTCCCTAC TCACCAACTC GACTTTAAAA TCACCTTAAG
  Y
  ACAGTTGGCT TCTTTGAGAA GCAAGTCTTT AAACCAAGTG TGAAACGATG AGAATGCGTG
  GGTTATCCAG TGGAAGGGAA GGGAAAACAG TGTGACCCAA GGCAAGGGGA TGAGCTTTCC
  AGGGATGGAT GGGTGTGGAA GACCAGAGAC TGACTACAAA CAGTTGGGCA GAACATGAGA
  TTTGTATCAT CCAAGCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39536758	mCV23062074	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss48337463	NES12245707	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T	T		C	T	C		C
ss145056334	ENSMUSSNP2764861	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss325288335	CHEV_17_4281453	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33441340					SNP	T	T	C	T	C	T	C	T	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48337463	NES12245707	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:4331728 () rs orientation: forward

Symbol	Name	Function Class
D17Brg125	DNA segment, Chr 17, David E. Bergstrom 125	19 bp distal
Tssr146295	transcription start site region 146295	150 bp downstream