rs33441590 SNP Detail

Summary

• ID
  rs33441590
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26487369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTA AAGTGCCCCA TTATCAGCAT
  M
  CCCCCAACTG GAATGGTATG TTACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss39536215	mCV25263428	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss145398357	ENSMUSSNP128629	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs33441590					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26487369 () rs orientation: forward

Symbol	Name	Function Class
Gm16580	predicted gene 16580	942 bp upstream
Gm50013	predicted gene, 50013	within coordinates
Luc7l	Luc7-like	within coordinates
Rr329962	regulatory region 329962	432 bp proximal
Rr337090	regulatory region 337090	428 bp proximal
Tssr143221	transcription start site region 143221	1865 bp upstream
Tssr143222	transcription start site region 143222	1957 bp upstream
Tssr143223	transcription start site region 143223	1995 bp upstream