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rs33441590 SNP Detail
Summary
  • ID
    rs33441590
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr17:26487369 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ACCTA AAGTGCCCCA TTATCAGCAT
    M
    CCCCCAACTG GAATGGTATG TTACA                                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
C57BL/6J
ss39536215 mCV25263428 ABI CRAMUS_MOUSE f SNP C A
ss145398357 ENSMUSSNP128629 ENSEMBL ENSEMBL_Sanger f SNP C
SNP Consensus Information
SNP Consensus Type
A/J
C57BL/6J
rs33441590 SNP C A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:26487369 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm16580 predicted gene 16580 942 bp upstream
Gm50013 predicted gene, 50013 within coordinates
Luc7l Luc7-like within coordinates
Rr329962 regulatory region 329962 432 bp proximal
Rr337090 regulatory region 337090 428 bp proximal
Tssr143221 transcription start site region 143221 1865 bp upstream
Tssr143222 transcription start site region 143222 1957 bp upstream
Tssr143223 transcription start site region 143223 1995 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory