rs33441727 SNP Detail

Summary

• ID
  rs33441727
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13871547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGCCCTGG GAGGGTGCAA
  ATTTGTTGGG TTGTGCAAGT ACACTAGGAG AATCAATCCT GGAATCCCCG GGAGCGGAGT
  TTGTACCTTA CCGGACCGAA AGCAGCCATT ACAGGAATGG AGAGCAGGGC GGTGTCGCCA
  GACTACATTT CCCACAAGCC CTGCTGCCTA CTCCCGTCAT GCACAGCGCG CTCTGGGATC
  M
  CTGACTGAGG GATAGACCAC AGGCTGCTTG TTGTTCGGGT TTCACAAGTT TGCCCTCTGG
  TTTTACTGTT AAAGAGAGGG TGAGTGTTCA AGAAAAGGTT TAGTGAATTC GTAGGACTAA
  CGAAACAACA ATACGTGTTT TCTGCCCTGT AAAGGAATTC TAGCCGCATG AATATGTCTT
  GTTAGTACTC TGAAATAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47798590	NES11715319	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33441727					SNP	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798590	NES11715319	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13871547 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	21 bp upstream
Rr378964	regulatory region 378964	within coordinates
Smim30	small integral membrane protein 30	30 bp upstream
Tssr54958	transcription start site region 54958	within coordinates
Tssr59853	transcription start site region 59853	419 bp upstream
Tssr59854	transcription start site region 59854	372 bp upstream
Tssr59855	transcription start site region 59855	77 bp upstream
Tssr59856	transcription start site region 59856	61 bp upstream
Tssr59857	transcription start site region 59857	139 bp downstream
Tssr59858	transcription start site region 59858	736 bp downstream
Tssr59859	transcription start site region 59859	757 bp downstream
Tssr59860	transcription start site region 59860	771 bp downstream