rs33441731 SNP Detail

Summary

• ID
  rs33441731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13871762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCACAGGC TGCTTGTTGT
  TCGGGTTTCA CAAGTTTGCC CTCTGGTTTT ACTGTTAAAG AGAGGGTGAG TGTTCAAGAA
  AAGGTTTAGT GAATTCGTAG GACTAACGAA ACAACAATAC GTGTTTTCTG CCCTGTAAAG
  GAATTCTAGC CGCATGAATA TGTCTTGTTA GTACTCTGAA ATAAGGAAGT AACCGTGGGA
  R
  AGGGTAGCTG AGGGAAGCCA TCTGTTTGGG AATGTTTCAA ACCTGGGGCC TTCCAACATT
  TCTGCAGCAG AAAATCCCCG TTATCATTTT CCAAATGTGC CTAATGACAT TTGCTAATTT
  TTTAAAACTA ACGGGGAAAA TAAGCACATT TAATCAGAAA GTTTGGAAAA TATTGAATCA
  TTTGTGGTGC AAATCAGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47798594	NES11715321	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33441731					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798594	NES11715321	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13871762 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	within coordinates
Rr378964	regulatory region 378964	within coordinates
Rr626597	regulatory region 626597	186 bp distal
Rr626598	regulatory region 626598	within coordinates
Smim30	small integral membrane protein 30	245 bp upstream
Tssr54958	transcription start site region 54958	201 bp downstream
Tssr59853	transcription start site region 59853	634 bp upstream
Tssr59854	transcription start site region 59854	587 bp upstream
Tssr59855	transcription start site region 59855	292 bp upstream
Tssr59856	transcription start site region 59856	276 bp upstream
Tssr59857	transcription start site region 59857	56 bp upstream
Tssr59858	transcription start site region 59858	521 bp downstream
Tssr59859	transcription start site region 59859	542 bp downstream
Tssr59860	transcription start site region 59860	556 bp downstream