rs33442213 SNP Detail

Summary

• ID
  rs33442213
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9151735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATGCTA CTGTCTAACT
  GCCTTGTAAT TCAAGCAGGT CGAAATAGTT ACACAGTATT AACGAACTTA TTTATGAACA
  TCTTCAGTGC TGTTCTCAGA AGGGAGCTCT GGGTTTTCAG TGATAGGATA CGTCATAAAA
  CCTTGTAGCT CCTGTCATCA GAGGCTGAGC CTGGGTTTTA GAGAGTTTTC ATGTATTATG
  W
  ATAAACTCTG CCCCTAATGT TTCACAGAAC ATATATGGGA TAACTAACAC TCAGGAGCTG
  CTCCAACTTA GCACTGGGGC CCCTGCCTCT AAGTGTCCAC ATTTGGGGTG TTCACTTTTC
  ATCAGCTCCT AGGCTTATGC CGCTGCTGCC TTTTAGACAG AACTTCTCAG AGGCTGTCCA
  GTCAGCTTTC ACAGCAGAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46813999	NES10971953	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33442213					SNP	A	A	A	A	A	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813999	NES10971953	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9151735 () rs orientation: forward

Symbol	Name	Function Class
H2al1m	H2A histone family member L1M	1208 bp downstream
Xk	X-linked Kx blood group	within coordinates