rs33442515 SNP Detail

Summary

• ID
  rs33442515
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13872990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAAGTGTC TTGCTTAAGC
  TTTAAGTTTG CAGAGTCTAT GCATGGTAAA AATGTTCATC TTTTCAATTA TTGTAGTTAG
  AAATTAACTA ATGACTTGGT CTATCTGTAA AACCGTGGTA CAAATTGGTG TAGGGATATT
  TTGGGCTCAA ATATAGTTTT AAACTGAAAT CTGTTGCATT TTGCTAATTA GGTTCTCTCC
  K
  TATTGGAAAT CCAAGGAAAT GCTTTTACAA CAGCACTTTT AGGTTAGAGG CTATTATAAT
  TCTATTTTTT CCTCATTCTA TTCTAACTAG TCTGTTTTTC TTTTAATAGT AATTTATTCC
  TTTACTTTAA AACAACGGTT CCACCATACT AGACAAACTT TCAGGTTACT TGTCAAGATG
  CAAATCTCAG AACTACTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47798598	NES11715324	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33442515					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798598	NES11715324	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13872990 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	within coordinates
Rr378964	regulatory region 378964	485 bp downstream
Rr626597	regulatory region 626597	1414 bp distal
Rr626598	regulatory region 626598	656 bp distal
Smim30	small integral membrane protein 30	1473 bp upstream
Tssr54958	transcription start site region 54958	1429 bp downstream
Tssr59853	transcription start site region 59853	1862 bp upstream
Tssr59854	transcription start site region 59854	1815 bp upstream
Tssr59855	transcription start site region 59855	1520 bp upstream
Tssr59856	transcription start site region 59856	1504 bp upstream
Tssr59857	transcription start site region 59857	1284 bp upstream
Tssr59858	transcription start site region 59858	693 bp upstream
Tssr59859	transcription start site region 59859	675 bp upstream
Tssr59860	transcription start site region 59860	646 bp upstream