rs33442517 SNP Detail

Summary

• ID
  rs33442517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13873042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCATCTT TTCAATTATT
  GTAGTTAGAA ATTAACTAAT GACTTGGTCT ATCTGTAAAA CCGTGGTACA AATTGGTGTA
  GGGATATTTT GGGCTCAAAT ATAGTTTTAA ACTGAAATCT GTTGCATTTT GCTAATTAGG
  TTCTCTCCGT ATTGGAAATC CAAGGAAATG CTTTTACAAC AGCACTTTTA GGTTAGAGGC
  Y
  ATTATAATTC TATTTTTTCC TCATTCTATT CTAACTAGTC TGTTTTTCTT TTAATAGTAA
  TTTATTCCTT TACTTTAAAA CAACGGTTCC ACCATACTAG ACAAACTTTC AGGTTACTTG
  TCAAGATGCA AATCTCAGAA CTACTCTCCT TACCTCTGAG GGGGTTCCAC CACTCACATA
  CTCTTTCCAT TCCATGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47798600	NES11715326	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33442517					SNP	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798600	NES11715326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13873042 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	within coordinates
Rr378964	regulatory region 378964	537 bp downstream
Smim30	small integral membrane protein 30	1525 bp upstream
Tssr54958	transcription start site region 54958	1481 bp downstream
Tssr59853	transcription start site region 59853	1914 bp upstream
Tssr59854	transcription start site region 59854	1867 bp upstream
Tssr59855	transcription start site region 59855	1572 bp upstream
Tssr59856	transcription start site region 59856	1556 bp upstream
Tssr59857	transcription start site region 59857	1336 bp upstream
Tssr59858	transcription start site region 59858	745 bp upstream
Tssr59859	transcription start site region 59859	727 bp upstream
Tssr59860	transcription start site region 59860	698 bp upstream