rs33442519 SNP Detail

Summary

• ID
  rs33442519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13873194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAATCCA AGGAAATGCT
  TTTACAACAG CACTTTTAGG TTAGAGGCTA TTATAATTCT ATTTTTTCCT CATTCTATTC
  TAACTAGTCT GTTTTTCTTT TAATAGTAAT TTATTCCTTT ACTTTAAAAC AACGGTTCCA
  CCATACTAGA CAAACTTTCA GGTTACTTGT CAAGATGCAA ATCTCAGAAC TACTCTCCTT
  R
  CCTCTGAGGG GGTTCCACCA CTCACATACT CTTTCCATTC CATGCACATT TAATGCTCGA
  CTGTTTAATA CAAAAGCTAA TTTGTTTTCC TCTATTGACA TTTTGCTCTT GCTGTTTTCT
  CTGCCAGTAA TACTTTCCGA CAGATTTGTC ATAGTTATTC TTAGCATCAT CCAGGGTTTA
  GAGCTTTGTT CAAGCTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47798602	NES11715328	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33442519					SNP	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798602	NES11715328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13873194 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	within coordinates
Rr378964	regulatory region 378964	689 bp downstream
Smim30	small integral membrane protein 30	1677 bp upstream
Tssr54958	transcription start site region 54958	1633 bp downstream
Tssr59855	transcription start site region 59855	1724 bp upstream
Tssr59856	transcription start site region 59856	1708 bp upstream
Tssr59857	transcription start site region 59857	1488 bp upstream
Tssr59858	transcription start site region 59858	897 bp upstream
Tssr59859	transcription start site region 59859	879 bp upstream
Tssr59860	transcription start site region 59860	850 bp upstream