rs33443052 SNP Detail

Summary

• ID
  rs33443052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88197150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG CGGCGGCGAG CCAACCTAGG
  Y
  GCTTGGCTGG CAGCCACGAA GGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46276807	mCV24212793	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss145439788	ENSMUSSNP1513216	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33443052					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88197150 () rs orientation: forward

Symbol	Name	Function Class
Cbln1	cerebellin 1 precursor protein	within coordinates
Cpgi20770	CpG island 20770	831 bp distal
Cpgi20771	CpG island 20771	within coordinates
Cpgi20772	CpG island 20772	1073 bp proximal
Rr382427	regulatory region 382427	1247 bp downstream
Rr666962	regulatory region 666962	1854 bp proximal
Rr666963	regulatory region 666963	1979 bp proximal
Tssr82308	transcription start site region 82308	600 bp upstream
Tssr82309	transcription start site region 82309	413 bp upstream
Tssr82310	transcription start site region 82310	220 bp upstream
Tssr82311	transcription start site region 82311	61 bp upstream
Tssr82312	transcription start site region 82312	117 bp downstream
Tssr82313	transcription start site region 82313	146 bp downstream
Tssr82314	transcription start site region 82314	1599 bp downstream
Tssr82315	transcription start site region 82315	1639 bp downstream
Tssr82316	transcription start site region 82316	1678 bp downstream
Tssr82317	transcription start site region 82317	1843 bp downstream