rs33443075 SNP Detail

Summary

• ID
  rs33443075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:115080422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAG AGACCCGAAG CCGGTAGGGG
  R
  CTTTCTGGGG CTCAGGCTCC TCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45779549	mCV25153014	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss149119420	ENSMUSSNP1301949	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss321653898	CHEV_5_115392372	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33443075					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115080422 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2210016L21Rik	RIKEN cDNA 2210016L21 gene			Intron
				Splice-Site
Cpgi16342	CpG island 16342			within coordinates
Rr399277	regulatory region 399277			14 bp downstream
Rr618069	regulatory region 618069			1001 bp distal
Rr618070	regulatory region 618070			195 bp distal
Rr618071	regulatory region 618071			160 bp distal
Tssr48192	transcription start site region 48192			151 bp downstream
Tssr48193	transcription start site region 48193			140 bp downstream