rs33443209 SNP Detail

Summary

• ID
  rs33443209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9302651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACGGTGT TTTCAGAGTC
  CTTGTAACTG AGATCAAACT TTGCCACAAA TAGTTAAAAT TGACTCATTA ATTATACCAA
  ACAAATGTAT GTTGAATGAA TGACCTAATG CCTAGGGTGC AACACGAAGG TCTGTCTGGA
  CCTTTGTCCC AGGGCAACAA TTCTCCTGGT ACCATGTGCA CATCTAGGAA GGCCTTATTT
  R
  CCAGAACCAG CCTTGAGTGC TCTAAGGATG CTAAGCGAAC AAGAGCATAG CAGGAACATA
  AGGAGAATCT GAGCTCTCCC TTCGTCTAGT CCCTTCAAAA TCTTCATACA ATAGCAAAAT
  TTGTGATCAG AACTAAAACT ATGCAATGCA ATATGAAGTC AAAACAAGAT GAGCGCATGC
  GTCCTTTAGT TACATGTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814932	NES10969912	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33443209					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814932	NES10969912	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9302651 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	913 bp downstream
Tssr160518	transcription start site region 160518	411 bp downstream
Tssr160519	transcription start site region 160519	218 bp upstream
Tssr160520	transcription start site region 160520	242 bp upstream
Tssr160521	transcription start site region 160521	329 bp upstream
Tssr160522	transcription start site region 160522	460 bp upstream
Tssr162873	transcription start site region 162873	764 bp upstream
Tssr162874	transcription start site region 162874	508 bp upstream
Tssr162875	transcription start site region 162875	485 bp upstream
Tssr162876	transcription start site region 162876	329 bp upstream
Tssr162877	transcription start site region 162877	310 bp upstream
Tssr162878	transcription start site region 162878	258 bp upstream
Tssr162879	transcription start site region 162879	152 bp upstream
Tssr162880	transcription start site region 162880	66 bp upstream
Tssr162881	transcription start site region 162881	48 bp upstream
Tssr162882	transcription start site region 162882	249 bp downstream
Tssr162883	transcription start site region 162883	629 bp downstream
Tssr162884	transcription start site region 162884	671 bp downstream
Tssr162885	transcription start site region 162885	715 bp downstream
Tssr162886	transcription start site region 162886	762 bp downstream
Tssr162887	transcription start site region 162887	789 bp downstream
Tssr162888	transcription start site region 162888	842 bp downstream
Tssr162889	transcription start site region 162889	872 bp downstream
Tssr162890	transcription start site region 162890	932 bp downstream
Tssr162891	transcription start site region 162891	966 bp downstream
Tssr162892	transcription start site region 162892	1019 bp downstream
Tssr162893	transcription start site region 162893	1123 bp downstream
Tssr162894	transcription start site region 162894	1153 bp downstream
Tssr162895	transcription start site region 162895	1213 bp downstream
Tssr162896	transcription start site region 162896	1239 bp downstream
Tssr162897	transcription start site region 162897	1266 bp downstream
Tssr162898	transcription start site region 162898	1290 bp downstream
Tssr162899	transcription start site region 162899	1436 bp downstream
Tssr162900	transcription start site region 162900	1446 bp downstream
Tssr162901	transcription start site region 162901	1477 bp downstream
Tssr162902	transcription start site region 162902	1559 bp downstream
Tssr162903	transcription start site region 162903	1620 bp downstream
Tssr162904	transcription start site region 162904	1721 bp downstream
Tssr162905	transcription start site region 162905	1805 bp downstream
Tssr162906	transcription start site region 162906	1809 bp downstream
Tssr162907	transcription start site region 162907	1882 bp downstream
Tssr162908	transcription start site region 162908	1906 bp downstream