rs33443212 SNP Detail

Summary

• ID
  rs33443212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9302832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAGGAAG GCCTTATTTA
  CCAGAACCAG CCTTGAGTGC TCTAAGGATG CTAAGCGAAC AAGAGCATAG CAGGAACATA
  AGGAGAATCT GAGCTCTCCC TTCGTCTAGT CCCTTCAAAA TCTTCATACA ATAGCAAAAT
  TTGTGATCAG AACTAAAACT ATGCAATGCA ATATGAAGTC AAAACAAGAT GAGCGCATGC
  R
  TCCTTTAGTT ACATGTGATA CATATCAAGT AGCAATGGAG GCCGAATCCT AACCACCATG
  AGACCCTTTG CCTCTGACAC TTCCCTTGTG AGTGTGGTGC TTTCCTTTCT CTCCTGTTGG
  CTTCACCACT TTCTCTCCAT CAAGGCCTCT GCTCTCTACT CTTCCTTCCT CATTACCAAA
  GCTGAATAGT TATAAGTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814935	NES10969913	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33443212					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814935	NES10969913	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9302832 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1094 bp downstream
Tssr160518	transcription start site region 160518	592 bp downstream
Tssr160519	transcription start site region 160519	37 bp upstream
Tssr160520	transcription start site region 160520	61 bp upstream
Tssr160521	transcription start site region 160521	148 bp upstream
Tssr160522	transcription start site region 160522	279 bp upstream
Tssr162873	transcription start site region 162873	945 bp upstream
Tssr162874	transcription start site region 162874	689 bp upstream
Tssr162875	transcription start site region 162875	666 bp upstream
Tssr162876	transcription start site region 162876	510 bp upstream
Tssr162877	transcription start site region 162877	491 bp upstream
Tssr162878	transcription start site region 162878	439 bp upstream
Tssr162879	transcription start site region 162879	333 bp upstream
Tssr162880	transcription start site region 162880	247 bp upstream
Tssr162881	transcription start site region 162881	229 bp upstream
Tssr162882	transcription start site region 162882	68 bp downstream
Tssr162883	transcription start site region 162883	448 bp downstream
Tssr162884	transcription start site region 162884	490 bp downstream
Tssr162885	transcription start site region 162885	534 bp downstream
Tssr162886	transcription start site region 162886	581 bp downstream
Tssr162887	transcription start site region 162887	608 bp downstream
Tssr162888	transcription start site region 162888	661 bp downstream
Tssr162889	transcription start site region 162889	691 bp downstream
Tssr162890	transcription start site region 162890	751 bp downstream
Tssr162891	transcription start site region 162891	785 bp downstream
Tssr162892	transcription start site region 162892	838 bp downstream
Tssr162893	transcription start site region 162893	942 bp downstream
Tssr162894	transcription start site region 162894	972 bp downstream
Tssr162895	transcription start site region 162895	1032 bp downstream
Tssr162896	transcription start site region 162896	1058 bp downstream
Tssr162897	transcription start site region 162897	1085 bp downstream
Tssr162898	transcription start site region 162898	1109 bp downstream
Tssr162899	transcription start site region 162899	1255 bp downstream
Tssr162900	transcription start site region 162900	1265 bp downstream
Tssr162901	transcription start site region 162901	1296 bp downstream
Tssr162902	transcription start site region 162902	1378 bp downstream
Tssr162903	transcription start site region 162903	1439 bp downstream
Tssr162904	transcription start site region 162904	1540 bp downstream
Tssr162905	transcription start site region 162905	1624 bp downstream
Tssr162906	transcription start site region 162906	1628 bp downstream
Tssr162907	transcription start site region 162907	1701 bp downstream
Tssr162908	transcription start site region 162908	1725 bp downstream