rs33443271 SNP Detail

Summary

• ID
  rs33443271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162501692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA CTGCCTTTCT TTCCCTTTCT
  Y
  CCTCCCCTGA TTTCTTATGT GAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45279211	mCV22937967	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss148193124	ENSMUSSNP5315488	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss320601350	CHEV_2_162485508	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33443271					SNP	C	C	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162501692 () rs orientation: forward

Symbol	Name	Function Class
9430021M05Rik	RIKEN cDNA 9430021M05 gene	1391 bp upstream
Cpgi12617	CpG island 12617	387 bp proximal
Ptprt	protein tyrosine phosphatase receptor type T	within coordinates
Rr569217	regulatory region 569217	1693 bp distal
Rr569218	regulatory region 569218	within coordinates
Rr569219	regulatory region 569219	566 bp distal
Rr569220	regulatory region 569220	229 bp distal
Rr569221	regulatory region 569221	1312 bp proximal
Rr569222	regulatory region 569222	1511 bp proximal
Tssr21417	transcription start site region 21417	1420 bp upstream
Tssr21418	transcription start site region 21418	1472 bp upstream
Tssr21419	transcription start site region 21419	1532 bp upstream
Tssr27272	transcription start site region 27272	1277 bp downstream
Tssr27273	transcription start site region 27273	1303 bp downstream