rs33443342 SNP Detail

Summary

• ID
  rs33443342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165648701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG AGTTCTCAGA GGCCGGCTCA
  Y
  CTTGGCAGGG GTTTGGAAGG AAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45278880	mCV25002682	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss148244859	ENSMUSSNP3147472	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss320608828	CHEV_2_165632281	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33443342					SNP	C	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165648701 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2410087M07Rik	RIKEN cDNA 2410087M07 gene			767 bp upstream
Rr570013	regulatory region 570013			1285 bp proximal
Tssr21733	transcription start site region 21733			747 bp upstream
Tssr27635	transcription start site region 27635			1492 bp downstream
Zmynd8	zinc finger, MYND-type containing 8			Intron
				Noncoding-Transcript-Variant