rs33443437 SNP Detail

Summary

• ID
  rs33443437
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24691051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC GACAGCCTCC GCTACTCTGC
  Y
  TCTTTGACAT CACAATTGTC TGTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39536584	mCV24345996	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss145356429	ENSMUSSNP3735946	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325331946	CHEV_17_24609022	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33443437					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24691051 () rs orientation: forward

Symbol	Name	Function Class
4833447I15Rik	RIKEN cDNA 4833447I15 gene	1836 bp upstream
Bricd5	BRICHOS domain containing 5	1807 bp upstream
Cpgi8720	CpG island 8720	603 bp distal
Mlst8	MTOR associated protein, LST8 homolog (S. cerevisiae)	1474 bp downstream
Pgp	phosphoglycolate phosphatase	within coordinates
Rr405085	regulatory region 405085	1819 bp downstream
Rr523319	regulatory region 523319	1675 bp distal
Rr523320	regulatory region 523320	within coordinates
Rr523321	regulatory region 523321	1317 bp proximal
Tssr143033	transcription start site region 143033	1891 bp downstream
Tssr143034	transcription start site region 143034	1596 bp downstream
Tssr143035	transcription start site region 143035	1574 bp downstream
Tssr143036	transcription start site region 143036	1242 bp downstream
Tssr143037	transcription start site region 143037	1818 bp upstream