rs33443986 SNP Detail

Summary

• ID
  rs33443986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43671047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTT CTCTGCCTGT TGCCCGTCTC
  Y
  CCTTAGTTTC ATGGTTCTTA GCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39536643	mCV25274919	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss145668101	ENSMUSSNP6777074	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss325395370	CHEV_17_43497105	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33443986					SNP	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43671047 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	295 bp upstream
Rr527086	regulatory region 527086	within coordinates
Rr527087	regulatory region 527087	306 bp proximal
Tssr144671	transcription start site region 144671	126 bp downstream
Tssr144672	transcription start site region 144672	166 bp upstream
Tssr144673	transcription start site region 144673	207 bp upstream
Tssr144674	transcription start site region 144674	230 bp upstream
Tssr144675	transcription start site region 144675	267 bp upstream
Tssr148115	transcription start site region 148115	1195 bp downstream